PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550309.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 300aa    MW: 33201.8 Da    PI: 10.0365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.8e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +        k R+  ++k++w++
   XP_010550309.1  5 KQKWTAEEEAALKAGVLKYGTGKWRTILSDPEfssvlKSRSNVDLKDKWRN 55
                     79***********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.88161IPR017930Myb domain
SuperFamilySSF466899.72E-16259IPR009057Homeodomain-like
SMARTSM007177.1E-7459IPR001005SANT/Myb domain
PfamPF002497.2E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-14556IPR009057Homeodomain-like
CDDcd116603.39E-18656No hitNo description
SuperFamilySSF467859.8E-14117193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-10118189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.2E-10118183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.402120188IPR005818Linker histone H1/H5, domain H15
PfamPF005384.8E-7123181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKYGTGKWRT ILSDPEFSSV LKSRSNVDLK DKWRNISVTA  60
LWGSRKKAKL ALKRILPTPT QDVDSSTLST VPLSYDEGKT NSSPPKVSGE SPQNDASKRS  120
ITSLDKIILE ALANLKEPRG SDRTSIFLYI EDNFRTPLNV QRHVAVRLKH LTSIGTLIKT  180
KHIYRIAPDS VTTGTTRQRS PQLLLEGNKE EDTLNVEENG VSSLIKSRVD EELFKIKGIT  240
AQEAAVAAAR TVAEAEFAIA EAEEAAREAE KAEAEAEAAQ IFAKAAMKAL KHRMRNHIWW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550309.10.0PREDICTED: telomere repeat-binding factor 2-like isoform X2
SwissprotQ9FJW51e-115TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLR0GN571e-123R0GN57_9BRAS; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80021571e-115(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.22e-97MYB_related family protein